Long-term monitoring of mammal communities in the Peneda-Gerês National Park using camera trap data
最新バージョン Biodiversity Data Journal によって公開 2023/08/23 Biodiversity Data Journal

We provide a dataset from long-term camera trap monitoring in the parishes of Castro Laboreiro and Lamas de Mouro, Peneda-Gerês National Park, between 2015 and 2023. We established a 16 km² grid of 64 cameras deployed yearly during the summer months. Here, we publish the data and images collected between 2015 and 2023, using GBIF Darwin Event Core. The project is on-going and additional data will be included in the future. The dataset is freely available for ecological analysis but also for trainining machine learning systems in automated image classification as all pictures have been manually classified.

GBIF DwC A EML RTF バージョン 権利 これを引用してください。
データ レコード

この sampling event リソース内のデータは、1 つまたは複数のデータ テーブルとして生物多様性データを共有するための標準化された形式であるダーウィン コア アーカイブ (DwC-A) として公開されています。 コア データ テーブルには、528 レコードが含まれています。

拡張データ テーブルは1 件存在しています。拡張レコードは、コアのレコードについての追加情報を提供するものです。 各拡張データ テーブル内のレコード数を以下に示します。

  • Event (コア)
    528
  • Occurrence 
    20438

この IPT はデータをアーカイブし、データ リポジトリとして機能します。データとリソースのメタデータは、 ダウンロード セクションからダウンロードできます。 バージョン テーブルから公開可能な他のバージョンを閲覧でき、リソースに加えられた変更を知ることができます。

ダウンロード

DwC-A形式のリソース データまたは EML / RTF 形式のリソース メタデータの最新バージョンをダウンロード:

DwC ファイルとしてのデータ ダウンロード 528 レコード English で (6 MB) - 更新頻度: as needed
EML ファイルとしてのメタデータ ダウンロード English で (22 kB)
RTF ファイルとしてのメタデータ ダウンロード English で (16 kB)
バージョン

次の表は、公にアクセス可能な公開バージョンのリソースのみ表示しています。

引用方法

研究者はこの研究内容を以下のように引用する必要があります。:

Zuleger A, Perino A, Wolf F, Wheeler H, Pereira H (2022): Long-term monitoring of mammal communities in the Peneda-Gerês National Park using camera trap data. v1.2. Biodiversity Data Journal. Dataset/Samplingevent. https://ipt.pensoft.net/resource?r=ct_peneda&v=1.2

権利

研究者は権利に関する下記ステートメントを尊重する必要があります。:

パブリッシャーとライセンス保持者権利者は Biodiversity Data Journal。 This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.

GBIF登録

このリソースをはGBIF と登録されており GBIF UUID: 88228250-e465-494e-858e-3bc327de01d7が割り当てられています。   Participant Node Managers Committee によって承認されたデータ パブリッシャーとして GBIF に登録されているBiodiversity Data Journal が、このリソースをパブリッシュしました。

キーワード

Samplingevent; camera traps; mammal; Portugal; long-term monitoring; Samplingevent

連絡先

リソースを作成した人:

Annika Zuleger
Doctoral Researcher
iDiv - Deutsches Zentrum für integrative Biodiversitätsforschung
Puschstraße 4
04103 Leipzig
DE
Andrea Perino
Science-Policy Coordinator
iDiv - Deutsches Zentrum für integrative Biodiversitätsforschung
Puschstraße 4
04103 Leipzig
DE
Florian Wolf
Technical Assistant
iDiv - Deutsches Zentrum für integrative Biodiversitätsforschung
Puschstraße 4
04103 Leipzig
DE
Helen Wheeler
Senior Lecturer
School of Life Sciences, Anglia Ruskin University
Cambridge
GB
Henrique Pereira
Head of Research Group
iDiv - Deutsches Zentrum für integrative Biodiversitätsforschung
Puschstraße 4
04103 Leipzig
DE

リソースに関する質問に答えることができる人:

Annika Zuleger
Doctoral Researcher
iDiv - Deutsches Zentrum für integrative Biodiversitätsforschung
Puschstraße 4
04103 Leipzig

メタデータを記載した人:

Annika Zuleger
Doctoral Researcher
iDiv - Deutsches Zentrum für integrative Biodiversitätsforschung
Puschstraße 4
04103 Leipzig

他に、リソースに関連付けられていた人:

論文著者
Annika Zuleger
Doctoral Researcher
iDiv - Deutsches Zentrum für integrative Biodiversitätsforschung
Puschstraße 4
04103 Leipzig
DE
研究代表者
Henrique Pereira
Head of Research Group
iDiv - Deutsches Zentrum für integrative Biodiversitätsforschung
Puschstraße 4
04103 Leipzig
データ提供者
Andrea Perino
Science-Policy Coordinator
iDiv - Deutsches Zentrum für integrative Biodiversitätsforschung
Puschstraße 4
04103 Leipzig
データ提供者
Florian Wolf
Technical Assistant
iDiv - Deutsches Zentrum für integrative Biodiversitätsforschung
Puschstraße 4
04103 Leipzig
データ提供者
Helen Wheeler
Senior Lecturer
School of Life Sciences, Anglia Ruskin University
Cambridge
地理的範囲

Castro Laboreiro and Lamas de Mouro, Peneda-Gerês National Park, Portugal.

座標(緯度経度) 南 西 [41.997, -8.205], 北 東 [42.036, -8.158]
生物分類学的範囲

Mammals and birds were identified to the species level where possible.

Class  Mammalia (Mammals),  Aves (Birds)
時間的範囲
開始日 / 終了日 2015-04-19 / 2015-08-19
開始日 / 終了日 2016-04-13 / 2016-08-27
開始日 / 終了日 2017-05-08 / 2017-10-03
開始日 / 終了日 2018-05-05 / 2018-10-15
開始日 / 終了日 2019-05-07 / 2019-10-08
開始日 / 終了日 2020-06-02 / 2023-05-29
プロジェクトデータ

We provide a dataset from long-term camera trap monitoring in the Peneda-Gerês National Park that is on-going since 2015. We established a 16 km² grid of 64 cameras deployed yearly during the summer months. Since 2020 camera traps are also deployed during the winter and remain active all year with maintainance and data collection in May and October. The pictures are automatically grouped into sequences with each sequence representing a distinct occurrence event. We only obtained the information whether a species was present or absent on a picture, disregarding the number of individuals. Most observations were of domestic cattle (Bos taurus) and horses (Equus caballus) followed by European roe deer (Capreolus capreolus) and wild boar (Sus scrofa). Further observations include red fox (Vulpes vulpes), gray wolf (Canis lupus), Eurasian badger (Meles meles), stone marten (Martes foina), common genet (Genetta genetta), Iberian ibex (Capra pyrenaica) and red deer (Cervus elaphus). The project is on-going and additional data will be included in the future. The dataset is freely available for ecological analysis but also for trainining machine learning systems in automated image classification as all pictures have been manually classified.

タイトル Long-term monitoring of mammal communities in the Peneda-Gerês National Park (PNPG) using camera trap data
Study Area Description The study was conducted in the parishes of Castro Laboreiro and Lamas de Mouro in the Peneda-Gerês National Park in Northern Portugal. The park was created in 1971 with the aim to protect the high natural value landscape. It is the oldest protected area and the only national park in Portugal. Over the past 60 years the region underwent large land-use changes. Especially in the area surrounding Castro Laboreiro where historically agro-pastoral activities were common, with seasonal migration from summer villages at the plateau to winter villages in the valley, socio-economic changes lead to a large population decline. This abandonment opened possibilities for natural succession and passive rewilding in the area. Today the area supports a great diversity of habitats consisting of small agricultural fields in the valley, shrublands and oak forest patches in the hillside and pastures for cattle and agricultural fields in the plateau. Since 1971, Castro Laboreiro is part of the Peneda-Gerês National Park and since 1997, it is also part of the European protected area network Natura 2000. The elevation in the area ranges from 300 to 1,340 m. As it is located at the transition between the Mediterranean and Atlantic biogeographic zones, the region has a temperate Mediterranean climate, characterized by cold and rainy winters and warm summers. The average annual temperature throughout the study duration was 11.9 °C at 800m elevation, with an average annual precipitation of 1858 mm between 1985 and 2015. Within the camera trap grid, we identified seven different land-use types from aerial imagery in 2020, with bare rock accounting for almost half of the area (45.30%) followed by low shrub (20.13%) and oak forest (18.77%). While agriculture (2.42%) and urban infrastructure (1.11%) only represent a considerably small part of the area, high shrub and pine forest make up for 8.64% and 3.63% respectively.
研究の意図、目的、背景など(デザイン) The project aims to (1) assess the population trends of the medium and large size mammals of the region over time; (2) analyse the effects of passive rewilding and other environmental variables on the occurence and abundance; (3) look at potential interactions between wild and domestic species and (4) analyze effects of environmental and anthropogenic variables on their behavior (e.g. activity patterns).

プロジェクトに携わる要員:

論文著者
Annika Zuleger
収集方法

For the study, 64 camera traps (Reconyx Hyperfire HC600, Holmen, WI, USA) were deployed in a 16 km² grid South-West of Castro Laboreiro. They were distributed as uniformly as possible across the different land-use types (e.g. 10% of cameras in land-use types that cover 10% of the area) with one camera per 0.25 ha grid cell (approx. 500 m spacing between each camera). Real locations could deviate by up to 100 meters from the planned locations due to accessibility and placement possibilities. Further, some locations had to be adjusted throughout the years because of changes in the vegetation structure or due to theft, but new locations were within 100 m of the original location and placed in similar habitats. The coordinates in the dataset were rounded to three decimals for safety reasons. The cameras remained active for 24 hours per day and were programmed on motion sensor to take three consecutive pictures each time they were trigged by an animal with no delay after a trigger event. The sensitivity of the sensor was set to high in 2015, 2016 and 2019, medium in 2017 and 2018 and medium/high in 2020 (see eventRemarks). Sampling effort was measured as the number of camera traps multiplied by the number of days they remained active (Rovero et al. 2010).

Study Extent The dataset is obtained from a long-term monitoring campaign that is conducted every year since 2015. Currently, images from 2015 to 2021 are classified, but further data will be included in the future. In 2015 and 2016 camera traps were deployed from April to August and from 2017 to 2019 from May to October. In 2020, because of travel restrictions during the Covid pandemic camera traps could only be deployed in June and were left in the field until May, 2021. Due to theft and malfunction the number of operative cameras ranged from 61 in 2016 to 48 in 2020. Since 2020 cameras remain in the field all year with maintainance and data collection scheduled in May and October.
Quality Control To ensure using the updated scientific name and common name of species, the taxonomic nomenclature followed the catalogue of life (https://www.catalogueoflife.org/). Additionally, we checked every species in the database of the IUCN Red List of Threatened species (https://www.iucnredlist.org) for their conservation status and populations trends.

Method step description:

  1. Each image obtained from the camera traps was classified manually. The images were later imported into Agouti (https://www.agouti.eu/) to be made publicly available. There they were automatically grouped into sequences of contiguous images with each sequence representing one distinct occurrence event. The pre-classified observations were linked to the respective sequences using the image name. Starting with the data from 2020, the images were directly imported into Agouti and classified within the software. The dataset was exported from Agouti in Camtrap DP format and manually converted to Darwin Core standard. It is structured as a sample event dataset including the event and the occurrence data and published as a Darwin Core Archive (DwC-A). Here, an event refers to a camera trap deployment at a certain location over a certain amount of time (equivalent to "deployment" in Camtrap DP format) and an occurrence refers to a distinct occurrence event (here: sequence, equivalent to "observation" in Camtrap DP format). The published DwC-A dataset only includes events that contained observations of an animal. As the DwC-A format currently doesn't allow for hierachical datasets with more than two levels, we included the first ten images of each occurrence event as associatedMedia in the occurence table. The original Camtrap DP dataset including also blank and unknown occurrences will be published as supplemental material to this publication and made available through GBIF in the future.
追加のメタデータ
代替識別子 88228250-e465-494e-858e-3bc327de01d7
https://ipt.pensoft.net/resource?r=ct_peneda