Photo images, 3D models and CT scanned data of loaches (Botiidae, Cobitidae and Nemacheilidae) of Japan
Loach is one of the major cypriniform fishes in freshwater habitats of Japan, being recognized 23 described species/subspecies and 12 undescribed/undecides clades (Nakajima and Uchiyama 2017) (http://ffish.asia/loachesOfJapan). As well as molecular genetic research (Kitagawa et al. 2001a, Kitagawa et al. 2001b, Kitagawa et al. 2003a, Kitagawa et al. 2003b, Kitagawa et al. 2005, Suzawa 2006, Morishima et al. 2008, Saitoh et al. 2010, Kano et al. 2011, Miyazaki et al. 2011, Shimizu et al. 2011, Kano et al. 2012, Nakajima 2012, Nakajima 2016, Nakajima and Suzawa 2016, Nakajima and Uchiyama 2017), morphological examinations are needed for further development of loach study. Digital archiving of fish specimens is one of the progressive challenges in ichthyology for open science (Kanagawa Prefectural Museum of Natural History and National Museum of Nature and Science 1998, Berquist et al. 2012, Kano et al. 2013, Kano et al. 2016). This paper aimed to online publish photo images, 3D models and CT scanned data of all the known taxa/clades of loaches inhabiting in Japan (http://ffish.asia/loachesOfJapan3D) for the advances of loach study and ichthyology, and furthermore as a challenge of open science for public interests of biology.
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Kano Y (2021): Photo images, 3D models and CT scanned data of loaches (Botiidae, Cobitidae and Nemacheilidae) of Japan. v1.9. Biodiversity Data Journal. Dataset/Occurrence. http://ipt.pensoft.net/resource?r=jp_loaches_3dct_models&v=1.9
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此資源已向GBIF註冊，並指定以下之GBIF UUID: 1570db97-7b8d-4f12-9c3b-10c731460ca6。 Biodiversity Data Journal 發佈此資源，並經由Participant Node Managers Committee同意向GBIF註冊成為資料發佈者。
關鍵字
3D model; Anatomy; Bone; CT scan; Digital archiving; Fish specimen; Freshwater fishes of Japan; GBIF; Holotype; Loach; Morphology; Open science; Paratype; Skeleton; Undescribed species; Inventorythematic
外部資料
此資源尚有其他格式可用
| loachesOfJapan | http://ffish.asia/loachesOfJapan UTF-8 html; jpg |
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| loachesOfJapan3D | http://ffish.asia/loachesOfJapan3D UTF-8 html; Wavefront object format (.obj); CT dicom file (.dcm) |
聯絡資訊
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地理涵蓋範圍
Inland water habitats of Japan.
| 界定座標範圍 | 緯度南界 經度西界 [23, 123], 緯度北界 經度東界 [46, 150] |
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分類群涵蓋範圍
無相關描述
| Kingdom | Animalia (Animals) |
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| Phylum | Chordata (Chordates) |
| Subphylum | Craniata (Vertebrat es and hagfishes) |
| Class | Osteichthyes (Bony fishes and tetrapods) |
| Order | Cypriniformes (Carps, loaches, minnows and relatives) |
| Family | Botiidae (Botiid loach), Cobitidae (True loaches), Nemacheilidae (Stone loaches) |
| Species | Parabotia curtus ("Ayumodoki"), Cobitis kaibarai ("Ariake-suji-shima-dojyô"), Cobitis magnostriata ("Oogata-suji-shima-dojyô"), Cobitis matsubarae ("Yamato-shima-dojyô"), Cobitis sp. "yamato" complex Type A ("Yamato-shima-dojyô" (Type A)), Cobitis sakahoko ("Oyodo-shima-dojyô"), Cobitis shikokuensis ("Hina-ishi-dojyô"), Cobitis sp. BIWAE type A ("Oo-shima-dojyô"), Cobitis sp. BIWAE type B ("Nishi-shima-dojyô"), Cobitis sp. BIWAE type C ("Higashi-shima-dojyô"), Cobitis sp. BIWAE type D ("Tosas-shima-dojyô"), Cobitis takatsuensis ("Ishi-dojyô"), Cobitis takenoi ("Tango-suji-shima-dojyô"), Misgurnus sp. (Clade A) ("Kita-dojyô"), Misgurnus anguillicaudatus (Clade B1) ("Dojyô" (Japan clade)), Misgurnus anguillicaudatus (Clade B2) ("Dojyô" (China clade)), Misgurnus anguillicaudatus (jindai) ("Jindai-dojyô"), Misgurnus sp. IR ("Shinobi-dojyô"), Misgurnus sp. OK ("Hyoumon-dojyô"), Misgurnus dabryanus ("Kara-dojyô"), Niwaella delicata ("Ajime-dojyô"), Barbatula oreas ("Fuku-dojyô"), Lefua costata ("Hime-dojyô"), Lefua echigonia ("Hotoke-dojyô"), Lefua nikkonis ("Ezo-hotoke-dojyô"), Lefua sp. 1 ("Nagare-hotoke-dojyô"), Lefua sp. 2 ("Tôkai-nagare-hotoke-dojyô") |
| Subspecies | Cobitis minamorii minamorii ("San'yô-kogata-suji-shima-dojyô"), Cobitis minamorii oumiensis ("Biwa-kogata-suji-shima-dojyô"), Cobitis minamorii saninensis ("San'in-kogata-suji-shima-dojyô"), Cobitis minamorii tokaiensis ("Tôkai-kogata-suji-shima-dojyô"), Cobitis minamorii yodoensis ("Tôkai-kogata-suji-shima-dojyô"), Cobitis striata fuchigamii ("Onga-suji-shima-dojyô"), Cobitis striata hakataensis ("Hakata-suji-shima-dojyô"), Cobitis striata striata ("Chûgata-suji-shima-dojyô") |
時間涵蓋範圍
| 起始日期 / 結束日期 | 1954-06-06 / 2017-12-15 |
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計畫資料
無相關描述
| 計畫名稱 | N/A |
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| 經費來源 | This work was partially supported by JSPS KAKENHI Grant Number 18HP8029. |
參與計畫的人員:
取樣方法
The specimens were generally captured by a hand-net in the fields.
| 研究範圍 | Specimens of loaches of Japan were collected from personal collections and museums. |
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方法步驟描述:
- Photo images were taken in the fields by capturing individuals (Kano and Nakajima 2014) and/or by snorkeling. The formalin-fixed specimens were also photographed in the laboratory followed by CT scanning (Aloka Latheta LCT-200, Hitachi, Ltd.). 3D surface (CT value: -400 to -40) and skeletal (CT value: 5 to 200) models were extracted from the CT data. The CT data in raw file format was also stored and available on the web.
收藏資料
| 蒐藏名稱 | JNC/JNCP (J. Nakajima's personal collection) |
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| 蒐藏名稱 | KPM (Kanagawa Prefectural Museum of Natural History) |
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| 蒐藏名稱 | LBM (Lake Biwa Museum) |
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| 蒐藏名稱 | MPM/MPMQ (Mie Prefectural Museum) |
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| 蒐藏名稱 | OMNH (Osaka Museum of Natural History) |
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| 蒐藏名稱 | QUYK (Y. Kano's personal collection) |
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| 蒐藏名稱 | TKPM (Tokushima Prefectural Museum) |
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| 標本保存方法 | Formalin |
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額外的元數據
| 替代的識別碼 | 1570db97-7b8d-4f12-9c3b-10c731460ca6 |
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| http://ipt.pensoft.net/resource?r=jp_loaches_3dct_models |